Tag Archives: carcinogenesis

Department of Cell Signaling relay race of time: from studying the structure and function of individual proteins to analyzing protein–protein interaction networks

O. O. Hudkova, L. B. Drobot*

Palladin Institute of Biochemistry, National Academy of Sciences of Ukraine,
Department of Cell Signaling, Kyiv;
*e-mail: drobot@biochem.kiev.ua

Received: 30 September 2025; Revised: 08 October 2025;
Accepted: 30 October 2025; Available on-line: 2025

The review presents the history of establishment, key achievements, and development prospects of the Department of Cell Signaling at the Palladin Institute of Biochemistry of the NAS of Ukraine. As a structural unit of the institution, the Department was established in 2018 through the merger of two separate subdivisions: one of the oldest, the Department of Metabolic Regulation (founded in 1944), and the youngest, the Laboratory of Cell Signaling (founded in 2006). From its inception, the department’s primary research focus has been the study of the structure and functions of individual animal and microbial proteins. Significant contributions to the fundamental and applied achievements during that period were made by leaders of the Department, Dr.Sci., Professor Szörényi E.T., and Academician of NASU Huliy M.F., which were recognized with State Prizes of the USSR and the Ukrainian SSR (1953, 1978, 1988). Considerable attention has been given­ to transforming the department’s research direction to meet modern standards in molecular cell biology, a shift logically linked to the work of the unified unit under the leadership of Dr.Sci., Professor L.B. Drobot. This transformation involved not only the formal merger of two teams but also the integration of their scientific accomplishments and intellectual potential, combining traditional and innovative research approaches. The scientific paths of both subdivisions inevitably converged, necessitating joint investigations in response to contemporary challenges and societal demands. The department’s central focus became the elucidation of signaling mechanisms involved in the coordinated regulation of proliferation, differentiation, and apoptosis in normal and transformed cells with the participation of adaptor/scaffold protein Ruk/CIN85. Through the efforts of the department’s researchers, the pivotal role of Ruk/CIN85 in controlling the plasticity of tumor cells of various origins was convincingly demonstrated–particularly in the development of cancer stem cell traits, chemoresistance, tumor progression, and/or differentiation.

Experimental cancer rat models

Yu. D. Vinnichuk*, O. M. Platonov, O. O. Gryshchuk, S. V. Komisarenko

Palladin Institute of Biochemistry, National Academy of Sciences of Ukraine, Kyiv;
*e-mail: vinnichukju@gmail.com

Received: 06 August 2024; Revised: 17 December 2024;
Accepted: 21 February 2025; Available on-line: 03 March 2025

Experimental rat models are widely used in cancer research. This is facilitated by the diversity of existing inbred animal lines and their relatively low cost. The purpose of this review was to analyze and systematize the publications 2000-2024 selected in PubMed and in national author databases on various cancer rat models. The advantages, disadvantages, and prospects of using these models in the study of different­ aspects of cancer pathology are discussed. The information will help researchers choos an adequate experimental rat model to study the mechanisms of cancer development and the possibility of its treatment.

Extracellular vesicles produced by mouse breast adenocarcinoma 4T1 cells with up- or down-regulation of adaptor protein Ruk/CIN85 differentially modulate the biological properties of 4T1 WT cells

A. Yu. Zhyvolozhnyi1,2*, I. R. Horak1, D. S. Geraschenko1, M. O. Gomozkova3,
O. O. Hudkova1, S. J. Vainio2, A. A. Samoylenko2, L. B. Drobot1

1Palladin Institute of Biochemistry, National Academy of Sciences of Ukraine, Kyiv;
2Faculty of Biochemistry and Molecular Medicine, University of Oulu, Finland;
3Brigham Young University-Idaho, Rexburg, USA;
*e-mail: ppndl2@gmail.com

Received: 02 November 2021; Accepted: 12 November 2021

Extracellular vesicles (EVs) are secreted by most cell types under both physiological and pathological conditions and were proposed to be actively involved in intercellular communication. The mode of EVs action is dependent on their cargos composition. EVs  play an important role in tumor initiation, recurrence, metastasis and therapeutic resistance. EVs marker proteins Alix and Tsg101 and cortactin are the binding partners of adaptor protein Ruk/CIN85. The present study aims to analyze the regulatory effects of EVs produced by 4T1 cells with overexpression (RukUp) or down-regulation (RukDown) of adaptor protein Ruk/CIN85 on proliferation rate, migration and invasion activity of parental 4T1 WT cells. EVs from conditioned medium of 4T1 RukUp or RukDown cells were isolated by differential centrifugation followed by further purification using Exo-spin™ kit (Cell Guidance Systems). The number and size of EVs were characterized by NTA (Malvern Panalytical NanoSight NM300) instrument. The content of marker proteins and Ruk/CIN85 in isolated EVs was analyzed by Western-blotting. The viability, migration and invasion activity of 4T1 WT cells were studied using MTT-test, scratch-test and Boyden chamber assay, respectively. It was demonstrated for the first time that adaptor protein Ruk/CIN85 is a constitutive component of  EVs produced by 4T1 cells. It was also shown that EVs produced by 4T1 cells with different levels of Ruk/CIN85 expression are characterized by a specific profile of the content of its multiple molecular forms. It turned out that the ability of EVs to modulate the proliferative activity, motility and invasiveness of 4T1 WT cells was tightly correlated with the biological properties of 4T1 cells that produce EVs (highly aggressive 4T1 RukUp cells or weakly invasive 4T1 RukDown cells). Our data suggest that adaptor protein Ruk/CIN85 is not only a constitutive component of cargos composition of EVs produced by tumor cells but, depending on its content in EVs, plays an active role in the control of carcinogenesis.

Scientific and practical activity of the Laboratory of Cell Signaling Mechanisms of the Palladin Institute of Biochemistry of NAS of Ukraine

R. P. Vynogradova, I. Yu. Chernysh, V. M. Danilova

Palladin Institute of Biochemistry, National Academy of Sciences of Ukraine, Kyiv;
e-mail: valdan@biochem.kiev.ua

The article is devoted to the analysis of the scientific and practical activity of the laboratory of the signaling mechanisms of the cells of the Palladin Institute of Biochemistry, NAS of Ukraine, in the context of the history of its development. The most important results of studies of the mechanisms controlling proliferation, migration and invasion of tumor cells, which testify to the important role of the Ruk/CIN85 adapter protein in carcinogenesis, are presented. These studies are a priority and can serve as an experimental basis for the development of new generation pharmacological agents, the targets for which can be key centers for the organization of signaling systems of the cell – adapter and scaffold proteins.

Reactive oxygen species in signal transduction

L. B. Drobot1, A. A. Samoylenko1, A. V. Vorotnikov2, P. A. Tyurin-Kuzmin2,
A. V. Bazalii1, T. Kietzmann3, V. A. Tkachuk2, S. V. Komisarenko1

1Palladin Institute of Biochemistry, National Academy of Sciences of Ukraine, Kyiv;
e-mail: drobot@biochem.kiev.ua
2Lomonosov Moscow State University, Faculty of Basic Medicine, Russia;
3Department of Biochemistry and Biocenter Oulu, University of Oulu, Oulu, Finland;

Reactive oxygen species (ROS) are products of incomplete reduction of oxygen both nonradicals and radicals that function as mediators of redox signaling and oxidative stress depending on their levels in different­ subcellular compartments. Up to date, a huge body of data are accumulated, which supports a role of ROS as “second messengers” in intracellular signaling cascades that control cell growth, proliferation, apoptosis as well as migration and invasion. The current review summarizes data regarding ROS-dependent regulation of signaling­ networks components including MAPK, PI3K/Akt, PKC, NF-κB, Nrf2, FoxO and HIF-1α, and role of ROS in tumorigenesis.

Effect of dihydropyrrol and maleimide derivatives on the state of the liver and colon in normal rats and those with colorectal carcinogenesis induced by dimethylhydrazine

H. M. Kuznietsova, O. V. Lynchak, M. O. Danylov, I. P. Kotlyar, V. K. Rybalchenko

Taras Shevchenko National University of Kyiv, Ukraine;
e-mail: gala_kuznetsova@rambler.ru

No liver and colon alterations in rats, caused by cytostatic compounds 5-amino-4-(1,3-benzothyazol-2-yl)-1-(3-methoxyphenyl)-1,2-dihydro-3Н-pyrrol-3-one (D1) and 1-(4-Cl-benzyl)-3-Cl-4-(CF3-phenylamino)-1H-pyrrol-2,5-dione (MI-1) when administered over a long time were found, as evidenced by the histopathological data and the data of activity of transaminases, alkaline phosphatase and lactate dehydrogenase in the blood serum. D1 and MI-1 in vivo decrease the total area of DMH-induced colon tumors in rats by 46-60%. Furthermore, D1 and MI-1 partially protect the liver and colon mucosa from toxic effects caused by 1,2-dimethylhydrazine (DMH) reducing DNA oxidative modifications, as evidenced by urine 8-hydroxydeoxyguanosine level. The effects of both compounds are similar, but MI-1 is less toxic for the liver and colon of intact animals possessing more pronounced antitumor activity and protective properties in the setting of chemically induced carcinogenesis.